Links to related information resources
SRA accession codes
| SRA project code | Description |
|---|---|
| PRJEB2588 and PRJEB5294 | Leaf mRNAseq from TNDH mapping population |
| PRJNA309367 | RIPR: Brassica napus transcriptome |
| PRJNA309368 | RIPR: Brassicaceae transcriptome |
| PRJNA295685 | Evo-Genapus paper: EXTENSIVE HOMOEOLOGOUS GENOME EXCHANGES IN ALLOPOLYPLOID CROPS REVEALED BY MRNASEQ-BASED VISUALIZATION |
| PRJNA354232 | OREGIN top up sequencing |
| PRJNA528167 | OREGIN RNA sequencing, 2019 |
| PRJNA896133 | Heterosis pilot project RNA-seq data |
OREGIN
The Oilseed Rape Genetic Improvement Network
The principal activities of the OREGIN project are the generation,
gathering, collation and dissemination of information and genetic resources for the benefit of the stakeholders.
Associative Transcriptomics plots:
2013-2014 OREGIN disease traits
2016 Nov OREGIN results summary
2018 JAN OREGIN Phase4 JIC
2018 JAN OREGIN Phase4 trait1
2018 DEC OREGIN Phase4 trait2
2018 DEC OREGIN Phase4 trait3
2019-2020 NIAB pathology trials Withern in Lincolnshire
2019-2020 UoH Withern in Lincolnshire
2020-2021 ADAS OREGIN5 trial
2020-2021 NIAB Field data from the OREGIN
2020_2021 OREGIN trial Reading
2020-2021 University of Hertfordshire OREGIN field trial at Withern in Lincolnshire
2021-2022 ADAS OREGIN Trial
2021-2022 Elsoms OREGIN rooting data analysis
2021-2022 Elsoms OREGIN trial data
2021-2022 NIAB OREGIN trial data
2021-2022 University of Hertfordshire OREGIN trial data 2021
2021-2022 University of Hertfordshire OREGIN trial data phoma
2022-2023 Elsoms OREGIN Harlaxton trial data
2022-2023 ADAS OREGIN trial data
Files for download:
Brassica napus V12 pan-transcriptome co-ordinates
OREGIN gene expression data 288 lines with V12 pan-transcriptome reference(rpkm normalised)
OREGIN genotype data 288 lines with V12 pan-transcriptome reference
OREGIN 2019 full list scoring template (288 lines)
Heterosis pilot project trait data
Heterosis differential analysis result on heterotic vs non-heterotic lines
OREGIN_Aby_canker_LLS_29.6.22_UH.xlsx
1020774_OREGIN_5_ADAS_2021-22_data_summary_KS.xlsx
Elsoms_OREGIN_rooting_data_analysis_2021-22_KS.xlsx
OREGIN_trial_Aby_data_2021-22_NIAB.xlsx
OREGIN_Aby_phoma_LLS__8.04.22_UH.xlsx
OREGIN_harlaxton_23_data.xls
OREGIN_5_ADAS_23_data.xlsx
Historical data
Files for download:
Linkage map for Brassica napus population TERVDH
Linkage map for Brassica napus population TEHYDH
Linkage map for Brassica napus population TELEDH
Linkage map for Brassica napus population TESRDH
Linkage map for Brassica napus population TECADH
Linkage map for Brassica napus population TNDH
OREGIN population (255 lines)
OREGIN gene expression data (rpkm normalised)
OREGIN genotype data
Brassica napus V11 pan-transcriptome co-ordinates